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Species belonging to selected taxon:
Populus trichocarpa
ABOUT THIS RECORD
ID:
MNEST053049
species:
Populus trichocarpa
source:
PMRD, original name:
ptc-miRf11227-akr
Taxonomy by NCBI:
Populus trichocarpa
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTCCAGACCCAACGTGGGGTTGGGC
miRNA*
CCAATTTCAGGTTGGGCGTGGACGC
mismatches:
6
bulges:
0
View larger
pre-miRNA
CTGGGACAA
GTCCAGACCCAACGTGGGGTTGGGC
ATGGACGCGTCCAACCCCAACATGAGGTTGAGCCTGCACGCCCCCAAACATAAATTGAGTTTGGGT
GTGGACGCGTTCAGAC
CCAATTTCAGGTTGGGCGTGGACGC
GCCCAG
dot-bracket secondary structure
(((((....
(((((..((((((.((..((((((.
.((((((((((((.........(((((.....))).))....(((((((.........))))))).
.))))))))))))..)
)))))..)).))))))..)))))..
.)))))
SIMILARITIES
miRBase
no hits
PMRD
ptc-miRf11228-akr
:
1e-69
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
ptc-miRf11228-akr
from PMRD (
MNEST053050
)
MORE
miRNEST target predictions: none
non-miRNEST targets
HuntMi prediction:
true miRNA
additional data
download this record